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| BamIndexTest.cpp |
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| BamIndexTest.h |
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| Main.cpp |
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| Modify.cpp |
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| Modify.h |
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| ModifyVar.cpp |
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| ModifyVar.h |
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| ReadFiles.cpp |
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| ReadFiles.h |
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| SamFileTest.cpp |
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| SamFileTest.h |
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| ShiftIndels.cpp |
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| ShiftIndels.h |
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| TestCigarHelper.cpp |
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| TestCigarHelper.h |
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| TestEquals.cpp |
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| TestEquals.h |
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| TestFilter.cpp |
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| TestFilter.h |
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| TestPileup.cpp |
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| TestPileup.h |
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| TestPosList.cpp |
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| TestPosList.h |
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| TestSamCoordOutput.cpp |
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| TestSamCoordOutput.h |
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| TestSamRecordHelper.cpp |
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| TestSamRecordHelper.h |
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| TestSamRecordPool.cpp |
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| TestSamRecordPool.h |
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| TestValidate.cpp |
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| TestValidate.h |
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| ValidationTest.cpp |
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| ValidationTest.h |
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| WriteFiles.cpp |
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| WriteFiles.h |
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